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Bioperl example
Bioperl example



Bioperl example

Download Bioperl example

Download Bioperl example



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Date added: 22.02.2015
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BioPerl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and

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example bioperl

How to inform Bioperl that my fasta file is in a specific location and to use it for It is better if they kindly provide a complete working exmple (like for exampleMar 9, 2012 - Perl is a widely used language in bioinformatics. As I already experimented Python and Biopython for handling a few simple bioinformatics Bioperl provides software modules for many of the typical tasks of bioinformatics For retrieving data from genbank, for example, the code could be as follows:. A runnable script, bptutorial.pl, which demonstrates many of the capabilities of Bioperl. Runnable example code can also be found in the scripts/ and examples/

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Jump to Quick example - use Bio::Seq; use Bio::SeqIO; # create a sequence object of some DNA my $seq = Bio::Seq->new(-id => 'testseq', -seq Jump to Notes on this example - This bit of code has not been extensively tested. The fetch_all_by_external_name method does not accept a namespace Jump to Example Sequence Objects - Let's use some of the methods above and see what they return when the sequence object is obtained from different?Authors -?Copyright -?Abstract -?IntroductionBioperl scripts - BioPerlwww.bioperl.org/wiki/Bioperl_scriptsCachedSimilarThis site may be hacked.Feb 6, 2014 - There are two directories for these scripts, scripts/ and examples/. The scripts in scripts/ are production quality scripts that have POD Jump to Working Examples - The simplest script for parsing sequence files is written out below. It prints out the accession number for each entry in the file.


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